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National Center for Ecological Analysis and Synthesis

Project Description

In the face of ecological complexity, it has very often proved useful to formulate mathematical models, which allow us to examine the consequences of specific sets of assumptions. While this approach has generated interesting and important ideas, progress has been frustrated by a fundamental hurdle: direct confrontation of models and data in a statistically robust way. We propose a working group aimed at overcoming this hurdle by synthesizing numerous state-of-the-art techniques. The approaches we will consider explicitly take into account common causes of mismatch between models and data such as process noise (demographic and environmental stochasticity), measurement error, unobserved variables, and nonstationarity. The end result of this working group will be a thorough review of the strengths and weaknesses of the various approaches under different circumstances and a set of easy-to-use statistical tools for use by non-specialists.
Working Group Participants

Principal Investigator(s)

Aaron A. King, Pejman Rohani

Project Dates

Start: March 19, 2007

End: April 16, 2010

completed

Participants

Carles Breto
University of Michigan
Stephen P. Ellner
Cornell University
Matthew Ferrari
Pennsylvania State University
Gavin Gibson
Heriot Watt University
Giles Hooker
Cornell University
Edward Ionides
University of Michigan
Valerie Isham
University College London
Bruce E. Kendall
University of California, Santa Barbara
Aaron A. King
University of Michigan
Katia Koelle
University of Michigan
Michael Lavine
Duke University
Ken B. Newman
US Fish and Wildlife Service (FWS)
Daniel C. Reuman
Imperial College, London, Silwood Park Campus
Pejman Rohani
University of Georgia
Helen Wearing
University of New Mexico

Products

  1. Journal Article / 2009

    Local interactions lead to pathogen driven change to host population dynamics

  2. Presentations / 2008

    Presentation n

  3. Journal Article / 2009

    Time series analysis via mechanistic models

  4. Journal Article / 2011

    Compound Markov counting processes and their applications to modeling infinitesimally over-dispersed systems

  5. Journal Article / 2012

    Tracking measles infection through non-linear state space models

  6. Journal Article / 2010

    Resolving the impact of waiting time distributions on the persistence of measles

  7. Presentations / 2008

    Presentation i

  8. Presentations / 2008

    Presentation k

  9. Journal Article / 2008

    The dynamics of measles in sub-Saharan Africa

  10. Journal Article / 2010

    Plug and play inference for disease dynamics: Measles in large and small towns as a case study

  11. Journal Article / 2006

    Inference for nonlinear dynamical systems

  12. Presentations / 2007

    Presentation

  13. Presentations / 2007

    Presentation

  14. Presentations / 2007

    Presentation

  15. Presentations / 2007

    Presentation

  16. Presentations / 2007

    Presentation

  17. Presentations / 2007

    Presentation

  18. Presentations / 2007

    Presentation

  19. Presentations / 2007

    Presentation

  20. Presentations / 2007

    Presentation

  21. Book Chapter / 2008

    Modeling disease dynamics: Cholera as a case study

  22. Presentations / 2008

    Presentation

  23. Presentations / 2008

    Presentation

  24. Presentations / 2008

    Presentation a

  25. Presentations / 2008

    Presentation d

  26. Presentations / 2008

    Presentation f

  27. Presentations / 2008

    Presentation g

  28. Presentations / 2008

    Presentation h

  29. Journal Article / 2011

    Iterated filtering

  30. Presentations / 2007

    Presentation

  31. Presentations / 2007

    Presentation

  32. Presentations / 2007

    Presentation

  33. Presentations / 2007

    Presentation

  34. Presentations / 2007

    Presentation

  35. Presentations / 2007

    Presentation

  36. Journal Article / 2008

    Inapparent infections and cholera dynamics

  37. Presentations / 2008

    Presentation

  38. Presentations / 2008

    Presentation c

  39. Presentations / 2008

    Presentation j

  40. Software /

    Two algorithms for the POMP package

  41. Journal Article / 2010

    Decreasing stochasticity through enhanced seasonality in measles epidemics

  42. Presentations / 2008

    Presentation m

  43. Journal Article / 2009

    Monte Carlo inference for state-space models of wild animal populations

  44. Presentations / 2007

    Presentation

  45. Journal Article / 2008

    Colour of environmental noise affects the nonlinear dynamics of cycling, stage-structured populations

  46. Presentations / 2008

    Presentation b

  47. Presentations / 2009

    Presentation

  48. Presentations / 2009

    Presentation

  49. Presentations / 2008

    Presentation

  50. Presentations / 2008

    Presentation e

  51. Presentations / 2008

    Presentation l

  52. Presentations / 2008

    Presentation o

  53. Presentations / 2009

    Presentation

  54. Journal Article / 2011

    Statistical inference for multi-pathogen systems

  55. Presentations / 2008

    Presentation p

  56. Journal Article / 2009

    Estimating the duration of pertussis immunity using epidemiological signatures