NCEAS Working Groups
Unifying approaches to statistical inference in ecology
Project Description
In the face of ecological complexity, it has very often proved useful to formulate mathematical models, which allow us to examine the consequences of specific sets of assumptions. While this approach has generated interesting and important ideas, progress has been frustrated by a fundamental hurdle: direct confrontation of models and data in a statistically robust way. We propose a working group aimed at overcoming this hurdle by synthesizing numerous state-of-the-art techniques. The approaches we will consider explicitly take into account common causes of mismatch between models and data such as process noise (demographic and environmental stochasticity), measurement error, unobserved variables, and nonstationarity. The end result of this working group will be a thorough review of the strengths and weaknesses of the various approaches under different circumstances and a set of easy-to-use statistical tools for use by non-specialists.

Principal Investigator(s)
Aaron A. King, Pejman Rohani
Project Dates
Start: March 19, 2007
End: April 16, 2010
completed
Participants
- Carles Breto
- University of Michigan
- Stephen P. Ellner
- Cornell University
- Matthew Ferrari
- Pennsylvania State University
- Gavin Gibson
- Heriot Watt University
- Giles Hooker
- Cornell University
- Edward Ionides
- University of Michigan
- Valerie Isham
- University College London
- Bruce E. Kendall
- University of California, Santa Barbara
- Aaron A. King
- University of Michigan
- Katia Koelle
- University of Michigan
- Michael Lavine
- Duke University
- Ken B. Newman
- US Fish and Wildlife Service (FWS)
- Daniel C. Reuman
- Imperial College, London, Silwood Park Campus
- Pejman Rohani
- University of Georgia
- Helen Wearing
- University of New Mexico
Products
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Journal Article / 2009
Local interactions lead to pathogen driven change to host population dynamics
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Presentations / 2008
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Journal Article / 2009
Time series analysis via mechanistic models
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Journal Article / 2011
Compound Markov counting processes and their applications to modeling infinitesimally over-dispersed systems
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Journal Article / 2012
Tracking measles infection through non-linear state space models
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Journal Article / 2010
Resolving the impact of waiting time distributions on the persistence of measles
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Presentations / 2008
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Journal Article / 2008
The dynamics of measles in sub-Saharan Africa
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Journal Article / 2010
Plug and play inference for disease dynamics: Measles in large and small towns as a case study
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Journal Article / 2006
Inference for nonlinear dynamical systems
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Book Chapter / 2008
Modeling disease dynamics: Cholera as a case study
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Journal Article / 2011
Iterated filtering
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Journal Article / 2008
Inapparent infections and cholera dynamics
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Software /
Two algorithms for the POMP package
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Journal Article / 2010
Decreasing stochasticity through enhanced seasonality in measles epidemics
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Journal Article / 2009
Monte Carlo inference for state-space models of wild animal populations
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Journal Article / 2008
Colour of environmental noise affects the nonlinear dynamics of cycling, stage-structured populations
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Journal Article / 2011
Statistical inference for multi-pathogen systems
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Journal Article / 2009
Estimating the duration of pertussis immunity using epidemiological signatures